KMH's organization consists of the Senior management, college administration and six departments. The College Board handles and decides on questions about the overall orientation of the organization and the organization of the college.
From 1 July 2018, KMH has a changed organizational structure. The former departments are included in three new academies:
- Academy of Folk Music, Jazz and Music and Media Production
- Academy of Music Education
- Academy of Classical Music, Composition, Conducting and Music Theory
Otherwise, the organization is unchanged.