KMH's organization consists of the college management, college administration and three academies. The College Board handles and decides on questions about the overall orientation of the college and the organizational structure.
From 1 July 2018, KMH has a changed organizational structure. The former departments are included in three new academies:
- Academy of Folk Music, Jazz and Music and Media Production
- Academy of Music Education
- Academy of Classical Music, Composition, Conducting and Music Theory
Otherwise, the organization is unchanged.